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Table 5 Top 31 genes extracted from two different models from PLS-DA SIMCA.

From: Predictors of primary breast cancers responsiveness to preoperative Epirubicin/Cyclophosphamide-based chemotherapy: translation of microarray data into clinically useful predictive signatures

Gene Symbol

Gene Description

Ref. Sequences

Unigene ID

KPNA2

nuclear localization sequence receptor hSRP1alpha, karyopherin alpha 2 (RAG cohort 1 importin alpha 1)

NM_002266

4504896

HDAC2

transcriptional regulator homolog RPD3 histone deacetylase 2 similar to yeast RPD3

NM_001527

4557640

PRKAB1

5-AMP-activated protein kinase beta-1, non-catalytic subunit

NM_006253

18602783

IMPDH2

inosine monophosphate dehydrogenase (IMPDH2)

NM_000884

4504688

YR-29

hypothetical protein clone YR-29

NM_014886

7662676

CD2BP2

CD2 antigen (cytoplasmic tail)-binding protein 2

NM_006110

5174408

FHL2

heart protein (FHL-2) four and a half LIM domains 2

NM_001450

4503722

DDB2

damage-specific DNA binding protein p48 subunit (DDB2; 48 kD)

NM_000107

4557514

ASNS

asparagine synthetase

NM_001673

4502258

XPA

XPAC protein xeroderma pigmentosum complementation group A

NM_000380

4507936

PLA2G7

LDL-phospholipase A2 phospholipase A2 group VII (platelet-activating factor acetylhydrolase plasma)

NM_005084

4826883

BTBD2

BTB (POZ) domain containing 2 hypothetical protein FLJ20386 EST

NM_017797

8923361

CCNG1

cyclin G1 clone MGC:6

NM_004060

-

PDHB

pyruvate dehydrogenase E1-beta subunit d pyruvate dehydrogenase (lipoamide) beta

NM_000925

4505686

MKI67

mki67a (long type)antigen of monoclonal antibody Ki-67

NM_002417

4505188

TNRC15

KIAA0642 protein trinucleotide repeat containing 15

AL_045800

18550089

RPL17

ribosomal protein L17

NM_000985

14591906

GNG12

DKFZp586B0918 (from clone DKFZp586B0918)

NM_018841

-

RPL17

ribosomal protein L17

NM_000985

14591906

DKC1

Cbf5p homolog (CBF5) dyskeratosis congenita 1 dyskerin nucleolar protein

NM_001363

15011921

DCTN4

dynactin p62 subunit dynactin 4 (p62)

NM_016221

14733974

FLJ20273

RNA-binding protein

NM_019027

9506670

FLJ11323

hypothetical protein EST

NM_018390

8922994

MGC11242

hypothetical protein MGC11242 ESTs

NM_024320

13236560

SRR

serine racemase Homo sapiens cDNA

NM_021947

8922495

ARL3

48c8 ADP-ribosylation factor-like 3 EST

NM_004311

4757773

CCNB2

cyclin B2

NM_004701

10938017

MAD2L1

MAD2 protein MAD2 (mitotic arrest deficient yeast homolog)-like 1

NM_002358

6466452

LIG1

membrane glycoprotein LIG-1d

NM_015541

18554950

PMSCL1

polymyositisscleroderma autoantigen 1 (75 kD) EST

NM_005033

4826921

APBB2

amyloid beta (A4) precursor protein-binding, family B

NM_173075

18557629

  1. Note: – Genes in common with EC predictor (Table 3).