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Table 3 Sequence-based typing of NCI-60 HLA class II Loci

From: HLA class I and II genotype of the NCI-60 cell lines

Cell Line

ID

Tissue

DRβ1 Locus

DQB1 Locus

DPB1 Locus

BT-549

41292-D

Breast CA

11a, 13a

030101, 060401

020102, 0401

HS 578T

41293-D

Breast CA

01a, 150101

050101, 0602

0401, 7801

MCF7

41294-D

Breast CA

03a, 15a

0201, 0602

020102, 0401

MDA-MB-231

41296-D

Breast CA

0701, 1305

0202, 030101

020102, 1701

MDA-MB435

41297-D

Breast CA

040501, 130101

0302, 0603

1301, 1901

T47D

41298-D

Breast CA

010201

050101

020102, 0401

SF-268

41286-D

CNS CA

03a, 04a

0201, 0302

0401, 0601

SF-295

41287-D

CNS CA

14a, 15a

050301, 0602

0401

SF-539

41288-D

CNS CA

030101, 12a

0201, 030101

010101, 0401

SNB-19

41289-D

CNS CA

030101

0201

0402

SNB-75

41290-D

CNS CA

0103, 11a

03a, 050101

0401, 0402

U251

41291-D

CNS CA

030101

0201

0402

COLO 205

41299-D

Colon CA

040101, 130101

0603

0401

HCC-2998

41300-D

Colon CA

11a, 16a

030101, 050201

0401

HCT-116

41301-D

Colon CA

N.R.

02new, 03new

030101, 0402

HCT-15

41302-D

Colon CA

03a, 14a

02a, 050301

010101, 0401

HT29

41303-D

Colon CA

0402, 0701

02a, 0302

0401

KM12

41304-D

Colon CA

040101

0302

1301

SW-620

41305-D

Colon CA

0103, 130101

050101, 0603

010101, 0401

MOLT 4

41281-D

Leukemia, ALL

07new, 12new

0202, 030101

20102

CCRF-CEM

41282-D

Leukemia, ALL

030101, 0701

0201, 0202

0401, 1301

HL-60

41284-D

Leukemia, APL

N.R.

030302

0401, 1301

K-562

41280-D

Leukemia, CML

03a, 04a

0201, 0302

0401, 0402

SR

41285-D

Leukemia, LCIL

01a, 160101

050101, 050201

0401

LOX IMVI

41315-D

Melanoma

0701, 150101

0202, 0602

0401, 110101

M 14

41316-D

Melanoma

040501, 130101

0302, 0603

1301, 1901

SK-MEL-2

41317-D

Melanoma

0402, 130101

030101, 0603

020102, 0401

SK-MEL-5

41319-D

Melanoma

040101, 130101

0302, 0603

030101, 1601

SK-MEL-28

41318-D

Melanoma

0404

0302

030101

UACC-62

41321-D

Melanoma

12a, 130101

030101, 0603

0401, 1401

UACC-257

41320-D

Melanoma

040101

030101, 0302

0401

RPMI-8226

41283-D

MM

030101, 0701

0201, 0202

010102, 1301

A549/ATCC

41306-D

NSCLC

0701, 110401

0202, 030101

N.R.

EKVX

41307-D

NSCLC

150101

0602

0401

HOP-62

41308-D

NSCLC

13a, 15a

06a, 06a

0402

HOP-92

41309-D

NSCLC

01a, 150101

050101, 0602

0401, 0402

NCI-H23

41312-D

NSCLC

130101

0603

1901

NCI-H226

41311-D

NSCLC

150101, 160101

050201, 0602

020102, 0401

NCI-H322M

41310-D

NSCLC

0701

0202

0401

NCI-H460

41313-D

NSCLC

01a, 04a

030101, 050101

N.R.

NCI-H522

41314-D

NSCLC

040101, 150101

03a, 0602

0401

IGROV1

41322-D

Ovarian CA

11a, 11a

03new

new, 0501

OVCAR-3

41323-D

Ovarian CA

080101, 080401

0402

020102, 0401

OVCAR-4

41324-D

Ovarian CA

030101, 040101

0201, 030101

0401, 1301

OVCAR-5

41325-D

Ovarian CA

030101, 040101

0201, 030101

0401

OVCAR-8

41326-D

Ovarian CA

0701, 150101

030302, 0602

020102, 1301

NCI/ADR-RES

41295-D

Ovarian CA

0701, 150101

030302, 0602

020102, 1301

SK-OV-3

41327-D

Ovarian CA

01a, 030101

0201, 050101

020102, 0401

DU-145

41328-D

Prostate CA

N.R.

030302, 050101

0401

PC-3

41329-D

Prostate CA

0701, 130101

0202, 0603

0401

786-O

41330-D

Renal CA

13a, 15a

06a, 06a

0402

A498

41331-D

Renal CA

030101

0201

010101

ACHN

41332-D

Renal CA

160101

050201

020102

CAKI-1

41333-D

Renal CA

0701, 110401

0202, 03a

020102, 1001

SN12C

41334-D

Renal CA

040101, 150101

03a, 0602

N.R.

TK-10

41335-D

Renal CA

010201

050101

0402

UO-31

41336-D

Renal CA

130201, 150101

0602, 0609

0402, 0501

RXF-393

41337-D

Renal CA

110101, 150101

030101, 0602

010101, 0401

  1. Sequence-based typing for the HLA class II loci are reported with the highest degree of resolution. Non-resolved ambiguities are reported as two digit denominations with a superscript a as previously described [43]. HLA typings divergent from those originally described in the ATCC database are reported in red. ID# refers to the HLA laboratory reference number. New alleles are indicated by the suffix new following the allele. N.R. = Ambiguity not resolved at the lower level of resolution.