Table 1 Data sources used to explore the different biomedical dimensions of the project and for validation purposes.
From: Synergy-COPD: a systems approach for understanding and managing chronic diseases
Data-sets | Data-types | Reference | Brief Description. |
|---|---|---|---|
BioBridge | Metabolomics, Proteomics, Transcriptomics, Physiological and Clinical Measurements | COPD patients with low and normal fat free mass index and healthy subjects studied before and after training. | |
PAC-COPD | Clinical Measurements and Co-morbidity data. | [75] | COPD patients studied after the first hospitalization because of an episode of exacerbation. |
Medicare | ICD9 codes from hospital registries. | Health Insurance Program | |
Animal experiments | Muscle Transcriptomics and muscle & blood Cytokines. Role of eiF6 in energy metabolism | Synergy-COPD-FP7-ICT-270086:2010-13. | Guinea Pig and mice models, C2C12 cell culture. Normoxic and hypoxic conditions |
Public datasets | SNOMED-CT, MeSH, angiogenesis-related expression data, etc. | See Table 1 in COPDKB [35] | Public resources integrated into the Synergy-COPD Knowledge Base. |