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Table 4 Small RNA-Seq analysis of sera of Malaysian cases

From: Methods and matrices: approaches to identifying miRNAs for Nasopharyngeal carcinoma

Down-regulated

miRNA

MiRDeep (logFC)

Family

hsa-let-7f-1

−1.75

let-7/98/4458/4500

hsa-let-7f-2

−1.80

let-7/98/4458/4500

hsa-miR-10a

−2.71

miR-10abc/10a-5p

hsa-miR-10b

−3.04

miR-10abc/10a-5p

hsa-miR-126-5p

−2.43

miR-126-5p

hsa-miR-148a-3p

−1.42

miR-148ab-3p/152

hsa-miR-151a-3p

−2.37

miR-151-5p/151b

hsa-miR-182-5p

−2.20

miR-182

hsa-miR-21-5p

−0.99

miR-21

hsa-miR-26a-1

−2.22

miR-26ab/1297/4465

hsa-miR-26a-2

−2.23

miR-26ab/1297/4465

hsa-miR-27b-3p

−2.06

miR-27abc/27a-3p

hsa-miR-584-5p

−1.93

miR-584

miRNA

MiRDeep (logFC)

Family

hsa-let-7b

1.80

let-7/98/4458/4500

hsa-miR-106b-3p

2.87

miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d

hsa-miR-451a

3.33

miR-451

hsa-miR-484

2.17

miR-344a-5p/484/3155/3155b

hsa-miR-486-5p

3.06

miR-486-5p/3107

hsa-miR-92a-1

1.91

miR-25/32/92abc/363/363-3p/36

hsa-miR-92a-2

1.88

miR-25/32/92abc/363/363-3p/36

  1. Serum pools generated from individual samples used in qPCR analysis from were also subjected to small RNA-Seq. Table 4 shows the dysregulated miRNAs determined by the next generation sequencing.