TY - JOUR AU - Jafri, W. AU - Subhan, A. PY - 2010 DA - 2010// TI - Hepatitis C in Pakistan: magnitude, genotype, disease characteristics and therapeutic response JO - Tropical Gastroenterol VL - 29 ID - Jafri2010 ER - TY - JOUR AU - Al Naamani, K. AU - Al Sinani, S. AU - Deschenes, M. PY - 2013 DA - 2013// TI - Epidemiology and treatment of hepatitis C genotypes 5 and 6 JO - Can J Gastroenterol VL - 27 ID - Al Naamani2013 ER - TY - JOUR AU - Alter, M. J. PY - 2007 DA - 2007// TI - Epidemiology of hepatitis C virus infection JO - W J Gastroenterol VL - 13 UR - https://doi.org/10.3748/wjg.v13.i17.2436 DO - 10.3748/wjg.v13.i17.2436 ID - Alter2007 ER - TY - JOUR AU - Hussain, A. AU - Idrees, M. PY - 2013 DA - 2013// TI - The first complete genome sequence of HCV-1a from Pakistan and a phylogenetic analysis with complete genomes from the rest of the world JO - Virol J VL - 10 UR - https://doi.org/10.1186/1743-422X-10-211 DO - 10.1186/1743-422X-10-211 ID - Hussain2013 ER - TY - JOUR AU - Ashfaq, U. A. AU - Javed, T. AU - Rehman, S. AU - Nawaz, Z. AU - Riazuddin, S. PY - 2011 DA - 2011// TI - An overview of HCV molecular biology, replication and immune responses JO - Virol J VL - 8 UR - https://doi.org/10.1186/1743-422X-8-161 DO - 10.1186/1743-422X-8-161 ID - Ashfaq2011 ER - TY - JOUR AU - Jhaveri, R. AU - Kundu, P. AU - Shapiro, A. M. AU - Venkatesan, A. AU - Dasgupta, A. PY - 2005 DA - 2005// TI - Effect of heptitis C virus core protein on cellular gene expression: specific inhibition of cyclooxygenase 2 JO - J Infec Dis VL - 191 UR - https://doi.org/10.1086/429301 DO - 10.1086/429301 ID - Jhaveri2005 ER - TY - JOUR AU - Brass, V. AU - Moradpour, D. AU - Blum, H. E. PY - 2006 DA - 2006// TI - Molecular virology of hepatitis C virus (HCV): 2006 update JO - Int J Med Sci VL - 3 UR - https://doi.org/10.7150/ijms.3.29 DO - 10.7150/ijms.3.29 ID - Brass2006 ER - TY - JOUR AU - Penin, F. AU - Dubuisson, J. AU - Rey, F. A. AU - Moradpour, D. AU - Pawlotsky, J. M. PY - 2004 DA - 2004// TI - Structural biology of hepatitis C virus JO - Hepatol VL - 39 UR - https://doi.org/10.1002/hep.20032 DO - 10.1002/hep.20032 ID - Penin2004 ER - TY - JOUR AU - Afzal, S. AU - Idrees, M. AU - Ali, M. AU - Ilyas, M. AU - Hussain, A. AU - Akram, M. AU - Butt, S. AU - Saleem, S. AU - Rehman, I. AU - Ali, L. AU - Shahid, M. PY - 2011 DA - 2011// TI - Envelope 2 protein phosphorylation sites S75 & 277 of hepatitis C virus genotype 1a and interferon resistance: A sequence alignment approach JO - Virol J VL - 8 UR - https://doi.org/10.1186/1743-422X-8-71 DO - 10.1186/1743-422X-8-71 ID - Afzal2011 ER - TY - JOUR AU - Budkowska, A. PY - 2009 DA - 2009// TI - Mechanism of cell infection with hepatitis C virus (HCV)–a new paradigm in virus-cell interaction JO - Pol J Microbiol VL - 58 ID - Budkowska2009 ER - TY - JOUR AU - Idrees, S. AU - Ashfaq, U. A. AU - Idrees, N. PY - 2013 DA - 2013// TI - Development of global consensus sequence of HCV glycoproteins involved in viral entry JO - Theor Biol Med Model VL - 10 UR - https://doi.org/10.1186/1742-4682-10-24 DO - 10.1186/1742-4682-10-24 ID - Idrees2013 ER - TY - JOUR AU - Bartosch, B. AU - Dubuisson, J. AU - Cosset, F. -. L. PY - 2003 DA - 2003// TI - Infectious hepatitis C virus pseudo-particles containing functional E1–E2 envelope protein complexes JO - J Exp Med VL - 197 UR - https://doi.org/10.1084/jem.20021756 DO - 10.1084/jem.20021756 ID - Bartosch2003 ER - TY - JOUR AU - Ashfaq, U. A. AU - Masoud, M. S. AU - Nawaz, Z. AU - Riazuddin, S. PY - 2011 DA - 2011// TI - Glycyrrhizin as antiviral agent against Hepatitis C Virus JO - J Trans Med VL - 9 UR - https://doi.org/10.1186/1479-5876-9-112 DO - 10.1186/1479-5876-9-112 ID - Ashfaq2011 ER - TY - JOUR AU - Gardner, J. P. AU - Durso, R. J. AU - Arrigale, R. R. AU - Donovan, G. P. AU - Maddon, P. J. AU - Dragic, T. AU - Olson, W. C. PY - 2003 DA - 2003// TI - L-SIGN (CD 209 L) is a liver-specific capture receptor for hepatitis C virus JO - Proceed Nat Acad Sci VL - 100 UR - https://doi.org/10.1073/pnas.0831128100 DO - 10.1073/pnas.0831128100 ID - Gardner2003 ER - TY - JOUR AU - Helle, F. AU - Dubuisson, J. PY - 2008 DA - 2008// TI - Hepatitis C virus entry into host cells JO - Cell and Mol Life Sci VL - 65 UR - https://doi.org/10.1007/s00018-007-7291-8 DO - 10.1007/s00018-007-7291-8 ID - Helle2008 ER - TY - JOUR AU - Aman, W. AU - Mousa, S. AU - Shiha, G. AU - Mousa, S. A. PY - 2012 DA - 2012// TI - Current status and future directions in the management of chronic hepatitis C JO - Virol J VL - 9 UR - https://doi.org/10.1186/1743-422X-9-57 DO - 10.1186/1743-422X-9-57 ID - Aman2012 ER - TY - JOUR AU - Susser, S. AU - Welsch, C. AU - Wang, Y. AU - Zettler, M. AU - Domingues, F. S. AU - Karey, U. AU - Huges, E. AU - Ralston, R. AU - Tong, X. AU - Herrman, E. AU - Zeuzem, S. AU - Sarrazin, C. PY - 2009 DA - 2009// TI - Characterization of resistance to the protease inhibitor boceprevir in hepatitis C virus–infected patients JO - Hepatol VL - 50 UR - https://doi.org/10.1002/hep.23192 DO - 10.1002/hep.23192 ID - Susser2009 ER - TY - JOUR AU - Shiffman, M. L. AU - Esteban, R. PY - 2012 DA - 2012// TI - Triple therapy for HCV genotype 1 infection: telaprevir or boceprevir? JO - Liver Int VL - 32 UR - https://doi.org/10.1111/j.1478-3231.2011.02718.x DO - 10.1111/j.1478-3231.2011.02718.x ID - Shiffman2012 ER - TY - CHAP AU - Gasteiger, E. AU - Hoogland, C. AU - Gattiker, A. AU - Wilkins, M. R. AU - Appel, R. D. AU - Bairoch, A. PY - 2005 DA - 2005// TI - Protein Identification and Analysis Tools on the ExPASy Server BT - The Proteomics Protocols Handbook PB - Springer CY - Totowa UR - https://doi.org/10.1385/1-59259-890-0:571 DO - 10.1385/1-59259-890-0:571 ID - Gasteiger2005 ER - TY - JOUR AU - Cuff, J. A. AU - Clamp, M. E. AU - Siddiqui, A. S. AU - Finlay, M. AU - Barton, G. J. PY - 1998 DA - 1998// TI - JPred: a consensus secondary structure prediction server JO - Bioinform VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.10.892 DO - 10.1093/bioinformatics/14.10.892 ID - Cuff1998 ER - TY - JOUR AU - McGuffin, L. J. AU - Bryson, K. AU - Jones, D. T. PY - 2000 DA - 2000// TI - The PSIPRED protein structure prediction server JO - Bioinforma VL - 16 UR - https://doi.org/10.1093/bioinformatics/16.4.404 DO - 10.1093/bioinformatics/16.4.404 ID - McGuffin2000 ER - TY - JOUR AU - Milburn, D. AU - Laskowski, R. A. AU - Thornton, J. M. PY - 1998 DA - 1998// TI - Sequences annotated by structure: a tool to facilitate the use of structural information in sequence analysis JO - Prot Eng VL - 11 UR - https://doi.org/10.1093/protein/11.10.855 DO - 10.1093/protein/11.10.855 ID - Milburn1998 ER - TY - JOUR AU - Ferrè, F. AU - Clote, P. PY - 2005 DA - 2005// TI - DiANNA: a web server for disulfide connectivity prediction JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki412 DO - 10.1093/nar/gki412 ID - Ferrè2005 ER - TY - JOUR AU - Tamura, K. AU - Peterson, D. AU - Peterson, N. AU - Stecher, G. AU - Nei, M. AU - Kumar, S. PY - 2011 DA - 2011// TI - MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr121 DO - 10.1093/molbev/msr121 ID - Tamura2011 ER - TY - JOUR AU - Zhang, Y. PY - 2008 DA - 2008// TI - I-TASSER server for protein 3D structure prediction JO - BMC Bioinform VL - 9 UR - https://doi.org/10.1186/1471-2105-9-40 DO - 10.1186/1471-2105-9-40 ID - Zhang2008 ER - TY - JOUR AU - Yang, Y. AU - Zhou, Y. PY - 2008 DA - 2008// TI - Specific interactions for ab initio folding of protein terminal regions with secondary structures JO - Proteins VL - 72 UR - https://doi.org/10.1002/prot.21968 DO - 10.1002/prot.21968 ID - Yang2008 ER - TY - JOUR AU - Laskowski, R. A. AU - MacArthur, M. W. AU - Moss, D. S. AU - Thornton, J. M. PY - 1993 DA - 1993// TI - PROCHECK: a program to check the stereochemical quality of protein structures JO - J Appl Cryst VL - 26 UR - https://doi.org/10.1107/S0021889892009944 DO - 10.1107/S0021889892009944 ID - Laskowski1993 ER - TY - JOUR AU - Guex, N. AU - Peitsch, M. C. PY - 1997 DA - 1997// TI - SWISS-MODEL and the Swiss-Pdb Viewer: an environment for comparative protein modeling JO - Electrophor VL - 18 UR - https://doi.org/10.1002/elps.1150181505 DO - 10.1002/elps.1150181505 ID - Guex1997 ER - TY - JOUR AU - Humphrey, W. AU - Dalke, A. AU - Schulten, K. PY - 1996 DA - 1996// TI - VMD: visual molecular dynamics JO - J Mol Graph VL - 14 UR - https://doi.org/10.1016/0263-7855(96)00018-5 DO - 10.1016/0263-7855(96)00018-5 ID - Humphrey1996 ER - TY - JOUR AU - Doytchinova, I. A. AU - Flower, D. R. PY - 2007 DA - 2007// TI - VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines JO - BMC Bioinform VL - 8 UR - https://doi.org/10.1186/1471-2105-8-4 DO - 10.1186/1471-2105-8-4 ID - Doytchinova2007 ER - TY - JOUR AU - Krogh, A. AU - Larsson, B. AU - Von Heijne, G. AU - Sonnhammer, E. L. PY - 2001 DA - 2001// TI - Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes JO - J Mol Biol VL - 305 UR - https://doi.org/10.1006/jmbi.2000.4315 DO - 10.1006/jmbi.2000.4315 ID - Krogh2001 ER - TY - JOUR AU - EL‒Manzalawy, Y. AU - Dobbs, D. AU - Honavar, V. PY - 2008 DA - 2008// TI - Predicting linear B-cell epitopes using string kernels JO - J Mol Recog VL - 21 UR - https://doi.org/10.1002/jmr.893 DO - 10.1002/jmr.893 ID - EL‒Manzalawy2008 ER - TY - JOUR AU - Singh, H. AU - Raghava, G. PY - 2001 DA - 2001// TI - ProPred: prediction of HLA-DR binding sites JO - Bioinform VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.12.1236 DO - 10.1093/bioinformatics/17.12.1236 ID - Singh2001 ER - TY - JOUR AU - Bui, H. -. H. AU - Sidney, J. AU - Li, W. AU - Fusseder, N. AU - Sette, A. PY - 2007 DA - 2007// TI - Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines JO - BMC Bioinform VL - 8 UR - https://doi.org/10.1186/1471-2105-8-361 DO - 10.1186/1471-2105-8-361 ID - Bui2007 ER - TY - JOUR AU - Lazoura, E. AU - Lodding, J. AU - Farrugia, W. AU - Ramsland, P. A. AU - Stevens, J. AU - Wilson, I. A. AU - Pietersz, G. A. AU - Apostolopoulos, V. PY - 2006 DA - 2006// TI - Enhanced major histocompatibility complex class I binding and immune responses through anchor modification of the non-canonical tumour-associated mucin 1–8 peptide JO - Immunol VL - 119 UR - https://doi.org/10.1111/j.1365-2567.2006.02434.x DO - 10.1111/j.1365-2567.2006.02434.x ID - Lazoura2006 ER - TY - JOUR AU - Niemann, H. H. AU - Schubert, W. -. D. AU - Heinz, D. W. PY - 2004 DA - 2004// TI - Adhesins and invasins of pathogenic bacteria: a structural view JO - Microb Infect VL - 6 UR - https://doi.org/10.1016/j.micinf.2003.11.001 DO - 10.1016/j.micinf.2003.11.001 ID - Niemann2004 ER - TY - JOUR AU - Pietersz, G. A. AU - Pouniotis, D. S. AU - Apostolopoulos, V. PY - 2006 DA - 2006// TI - Design of peptide-based vaccines for cancer JO - Curr Med Chem VL - 13 UR - https://doi.org/10.2174/092986706777441922 DO - 10.2174/092986706777441922 ID - Pietersz2006 ER - TY - JOUR AU - Bhasin, M. AU - Raghava, G. PY - 2007 DA - 2007// TI - A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes JO - J Biosci VL - 32 UR - https://doi.org/10.1007/s12038-007-0004-5 DO - 10.1007/s12038-007-0004-5 ID - Bhasin2007 ER - TY - JOUR AU - Sturniolo, T. AU - Bono, E. AU - Ding, J. AU - Raddrizzani, L. AU - Tuereci, O. AU - Sahin, U. AU - Braxenthaler, M. AU - Gallazzi, F. AU - Protti, M. P. AU - Sinigaglia, F. AU - Hammer, J. PY - 1999 DA - 1999// TI - Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices JO - Nat Biotechnol VL - 17 UR - https://doi.org/10.1038/9858 DO - 10.1038/9858 ID - Sturniolo1999 ER - TY - JOUR AU - Remaut, H. AU - Waksman, G. PY - 2004 DA - 2004// TI - Structural biology of bacterial pathogenesis JO - Curr Opin Struct Biol VL - 14 UR - https://doi.org/10.1016/j.sbi.2004.03.004 DO - 10.1016/j.sbi.2004.03.004 ID - Remaut2004 ER -