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Table 1 List of selected SNPs

From: Implementation of the CDC translational informatics platform - from genetic variants to the national Swedish Rheumatology Quality Register

  

Allele frequencies

 

Rs number

Locus

Major

Minor

Risk

6314

HTR2A

C

T

C

1328674

HTR2A

C

T

T

548234

PRDM1

T

C

C

4781003

CIITA

C

T

T

4535211

PLCL2

G

A

A

10431908

CIITA

A

G

G

544167

C2

G

T

G

12746613

FCGR2A

C

T

T

4810485

CD40

G

T

G

10498441

NID2

A

G

A

10499194

OLIG3,TNFAIP3

C

T

C

2064476

HLA-DPB2

A

G

A

706778

IL2RA

C

T

T

2736340

BLK

A

G

G

26232

C5orf30

C

T

C

540386

TRAF6

C

T

C

231707

C4orf8

G

A

A

10402677

CEACAM1

G

A

A

42041

CDK6

C

G

G

2024301

CLEC4A;POU5F1P3

A

T

T

3807306

IRF5

A

C

A

10488631

IRF5;TNPO3

T

C

C

3761847

TRAF1/C5

A

G

G

7026551

C5

A

C

C

11586238

CD2,CD58

C

G

G

231735

CTLA4

G

T

G

13017599

REL

A

G

G

394581

TAGAP

T

C

T

2263484

C21orf74

A

C

C

6682654

CD244

   

6859219

ANKRD55

C

A

C

13031237

REL

A

C

C

934734

SPRED2

A

G

G

11676922

AFF3

A

T

T

3087243

CTLA4

G

A

G

1678542

KIF5A

C

G

C

951500

CCL21

A

G

A

892188

GLP-1;FDX1L;ICAM5

C

T

T

1133104

CLEC4A;POU5F1P3

G

T

T

1980422

CD28

T

C

C

1859341

CEACAM8

A

G

G

3087456

CIITA

A

G

G

2271077

GALNTL2

A

G

A

2377422

CLEC4A;POU5F1P3

C

T

T

2476601

PTPN22

C

T

T

2812378

CCL21;C9orf144B

A

G

G

2240340

PADI4

C

T

T

6416647

CIITA

T

C

C

3890745

MMEL1

T

C

T

4272626

NHLH2

C

T

T

10258735

RPA3

A

G

G

3093023

CCR6

G

A

A

3218253

IL2RB

G

A

A

6822844

IL2,IL21

G

T

G

7234029

PTPN2

A

G

G

6457620

HLA-DRA

G

C

G

6920220

OLIG3,TNFAIP3

G

A

A

10413014

CEACAM8

A

G

G

7574865

STAT4

G

T

T

10468473

MAP2K4

G

A

A

10410147

CEACAM8

G

A

A

10919563

PTPRC

G

A

G

4750316

DKFZp667F0711/PRKCQ

G

C

G

2523451

MICA

A

G

G

6457617

HLA-DQ

C

T

C

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Journal of Translational Medicine

ISSN: 1479-5876

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