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Table 2 Gains and losses detected by array-CGH (ordered by the CNVs) in each case

From: Identification of prefoldin amplification (1q23.3-q24.1) in bladder cancer using comparative genomic hybridization (CGH) arrays of urinary DNA

CHROMOSOMAL REGIONS OF GAINS

1st Probe Name

Chromosome band (Ensembl)

Start position

CNV

Cases

Stage

Grade

Number of probes

A_14_P115961

19q13.12-q13.2

Chr19:041377289

0.41069

123HG

pT1

G2

152

A_14_P108613

20q13.13-20q13.2

Chr20:048671089

0.3998

123HG

pT1

G2

52

A_14_P123794

2p23.3

Chr2:027502237

0.31715

139HG

pT2

G3

5

A_14_P201430

20q12-q13.12

Chr20:039082984

0.30745

123HG

pT1

G2

101

A_14_P130062

19q12

Chr19:034522544

0.28517

123HG

pT1

G2

18

A_14_P118037

15q25.1

Chr15:077932195

0.27764

139HG

pT2

G3

8

A_14_P110668

8p12-p11.21

Chr8:036027406

0.26755

123HG

pT1

G2

120

A_14_P200557

19q13.42

Chr19:060805118

0.21635

139HG

pT2

G3

5

A_14_P128880

19p13.11

Chr19:017431158

0.20428

123HG

pT1

G2

68

A_14_P107769

15q21.2

Chr15:048417834

0.19587

123HG

pT1

G2

13

A_14_P119367

17q12

Chr17:034473380

0.17478

123HG

pT1

G2

32

A_14_P114294

11q12.3

Chr11:061766567

0.16714

123HG

pT1

G2

44

A_14_P108406

10p15.3-p12.31

Chr10:001070037

0.16666

123HG

pT1

G2

217

A_14_P103528

1q21.2-q21.3

Chr1: 146938814

0.16485

123HG

pT1

G2

141

131HG

pT1

G2

A_14_P126330

1q24.2-q24.3

Chr1:163305648

0.13374

123HG

pT1

G2

122

131HG

pT1

G2

A_14_P126727

1q23.3-q24.1

Chr1:157564589

0.12808

75HS

pT1

G2

116

123HG

pT1

G2

131HG

pT1

G2

A_14_P102488

6p21.1

Chr6:041358388

0.12681

123HG

pT1

G2

83

A_14_P135779

18p11.32-p11.21

Chr18:000170229

0.12203

123HG

pT1

G2

176

A_14_P105338

3p26.1-p21.33

Chr3:006615679

0.12067

123HG

pT1

G2

529

A_14_P101810

5p13.33-p12

Chr5:000148243

0.11948

123HG

pT1

G2

440

132HG

pT2

G3

A_14_P200670

16q11.2-q12.1

Chr16:045172598

0.11639

123HG

pT1

G2

49

A_14_P105981

22q12.2-q13.1

Chr22:030417113

0.10517

123HG

pT1

G2

162

A_14_P126618

7q21.2-q33

Chr7:091892016

0.10403

123HG

pT1

G2

631

CHROMOSOMAL REGIONS OF LOSSES

1st Probe Name

Chromosome band (Ensembl)

Start position

CNV

Cases

Stage

Grade

Number of probes

A_14_ P135773

13q14.2-q14.3

Chr13:047555252

−0.26486

132HG

pT2

G3

66

A_14_ P139280

11p15.5

Chr11:000283643

−0.18187

130HG

pTA

G1

6

75HS

pT1

G2

A_14_ P134493

10p15.3

Chr10:000138206

−0.16050

136HG

pTA

G1

9

138HG

pTA

G3

A_14_ P110624

9p24.3-p21.2

Chr9:000204367

−0.15219

123HG

pT1

G2

324

A_14_ P128129

10q11.22-q21.1

Chr10:047954413

−0.12787

123HG

pT1

G2

65

A_14_ P110069

2q37.1-q37.3

Chr2:233099731

−0.12386

131HG

pT1

G2

167

A_14_ P119514

8p23.3-p21.2

Chr8:000181530

−0.12229

123HG

pT1

G2

309

A_14_ P109355

16p11.2-p11.1

Chr16:031804884

−0.11781

123HG

pT1

G2

11

A_14_ P112424

7q22.1

Chr7::099453161

−0.11741

130HG

pTA

G1

75

A_14_ P103261

5q33.3-q35.1

Chr5:159767536

−0.11684

123HG

pT1

G2

95

  1. The minimal recurrent regions of gains and losses are highlighted in bold.