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Table 3 Numeric comparison of ExHap, GERMLINE, and Sweep.

From: Congruence as a measurement of extended haplotype structure across the genome

    ExHap GERMLINE Sweep
  Range in base pairs Cohort Percent Congruet Avg # of Shared Segments per chromosome, 0.75 Mb min length Avg EHH of 30 Core Haplotypes with Highest EHH at 600 Kb From Core
Chr2 135460477-136506753 CEU 79.0 19.1 0.69
   YRI 7.0 2.8 0.59
Chr8 99920891-100880665 CEU 72.7 9.3 0.90
   YRI 70.0 7.9 0.84
Chr10 103101047-104210566 CEU 9.1 4.5 0.51
   YRI 44.5 3.0 0.70
  1. Three regions were selected based on patterns of congruence in HapMap CEU and YRI cohorts. Allele identity plots of the regions are presented in Figures 5, 6, and 7. GERMLINE results are expressed as average number of shared segments per chromosome to account for the difference in the number of chromosomes between CEU (n = 176) and YRI (n = 200)