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Table 1 Sample vocabularies for key AD disease, pathological observations, and tissue concepts, used in the AD IN

From: Alzheimer's disease biomarker discovery using in silico literature mining and clinical validation

Alzheimer's Disease sub-types

Pathological observations in AD

Brain regions affected in AD

Alzheimer's Disease

Acute-Phase Reaction

Amygdala

Early Onset Alzheimer's Disease

Amyloid Deposition

Anterior Thalamic Nucleus

Early Onset Familial Alzheimer's Disease

Amyloid Fibril Formation

Basal Nucleus of Meynert

Familial Alzheimer's Disease

Amyloidosis

CA1 region

Incipient Alzheimer's Disease

Asymmetric Cortical Atrophy

CA2 region

Late Onset Alzheimer's Disease

Blood Brain Barrier Dysfunction

CA3 region

Late Onset Sporadic Alzheimer's Disease

Central Nervous System Inflammation

Cholinergic Neuron

Mid-Stage Alzheimer's Disease

Cerebral Atrophy

Diagonal Band of Broca

Mild-to-Moderate Alzheimer's Disease

Cholinergic Dysfunction

Entorhinal Cortex

Moderate Alzheimer's Disease

Corpus Callosum Atrophy

Frontal Lobe

Moderate-to-Severe Alzheimer's Disease

Dystrophic Neuronal Growth

Hippocampus

Sporadic Alzheimer's Disease

Glial Inflammation

Inferior Temporal Gyrus

Severe Alzheimer's Disease

Gliosis

Left Thalamus

 

Glucose Hypometabolism

Locus Coeruleus

 

Granulovacuolar Degeneration

Medial Temporal Cortex

 

Hippocampal Neurodegeneration

Parahippocampal Gyrus

 

Inflammation

Parietal Lobe

 

Locus Coeruleus Neuronal Loss

Prefrontal Cortex

 

Mitochondrial Failure

Septal Nucleus

 

Nerve Degeneration

Subiculum

 

Neuritic Plaque Formation

Substantia Innominata

 

Neurofibrillary Degeneration

Superior Temporal Gyrus

 

Neurofibrillary Lesion

Synapse

 

Neurofibrillary Tangle Formation

Temporal Isocortex

 

Neuroinflammation

Temporal Lobe

 

Neuronal Degeneration

Thalamus

 

Neuronal Dysfunction

 
 

Neuronal Dystrophy

 
 

Neuronal Inclusion Bodies

 
 

Neuronal Lesion

 
 

Neuronal Loss

 
 

Neuronal Necrosis

 
 

Neuronal Shrinkage

 
 

Occipital Atrophy

 
 

Oxidative Damage

 
 

Oxidative Stress

 
 

Perivascular Amyloidosis

 
 

Synapse Dysfunction

 
 

Synaptic Degeneration

 
 

Synaptic Loss

 
 

Synapse Enlargement

 
 

Tau Deposition

 
 

Tau Phosphorylation

 
 

Tau-Mediated Cytotoxicity